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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9892348_9893157_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9892348 - 9893157
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTTAAATCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTCTTTAAAT
Flanking Amino Acid:
LKECSSISELDLSNNSLGDE
Intron Amino Acid Position:
1023

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
65.1
40.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
68.4
0.41
0.9
59.7
40.4
Minor 5ss
32.7
-2
2.9
39.3
39.7
Minor BPS
78.3
0.97
1.3
88.96
35.8

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348