About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9893242_9894447_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9893242 - 9894447
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTGG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AATGCCTGGACT
Flanking Amino Acid:
KQTPTLSKKIRLTDCYFQAS
Intron Amino Acid Position:
995

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
55.9
43.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
42.3
-0.9
3.1
56
48.2
Minor BPS
60.6
0.41
1.6
75.33
41.1

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744