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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9894526_9895567_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9894526 - 9895567
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
GCACACTTACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TAATGTTTTACT
Flanking Amino Acid:
TEDKEFASPHREEPLYPTDD
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
56.3
0.14
1
47.8
39.9
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
52.5
0.16
2.1
73.6
43.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744