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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9907268_9910191_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9907268 - 9910191
Intron Length:
2924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCACATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTCTGACTT
Flanking Amino Acid:
DVSARSSVPKGFARRRRSSS
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.6
0.62
0.8
75
34.2
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
58.6
0.35
1.7
77.52
39.1

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348