Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9910255_9910900_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9910255 - 9910900

Intron Length:

646

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGGTG

5'SS Class:

major

3'SS Sequence:

CCAACTCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

CTGTGTTTAATT

Flanking Amino Acid:

EILLMSSAEEGNLSQKQEAR

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

69.7

40.9

Major BPS

81.8

0.79

1.1

34.5

Major PPT

66.1

0.36

0.8

62.4

34.3

Minor 5ss

32.9

-2

3.6

46.5

48.8

Minor BPS

61.1

0.43

1.8

74.76

43.2

Associated Gene:

Gene:

NLRC5

Ensembl Gene ID:

ENSAPLG00000014412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034821

9872122 - 9911865

39744

ENSAPLT00000027619

9872518 - 9911865

39348

ENSAPLT00000027112

9872518 - 9911865

39348

ENSAPLT00000015067

9872518 - 9911865

39348