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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9918928_9919277_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9918928 - 9919277
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTGATTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTAACCATAACT
Flanking Amino Acid:
SVVGIPEVISRIEPALTSLM
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
68.8
0.42
0.9
61.2
39.3
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
64.8
0.54
1.7
80.24
40.6

Associated Gene:

Gene:
CETP
Ensembl Gene ID:
ENSAPLG00000014801
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015466
9918629 - 9927402
8774