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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9924195_9924721_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9924195 - 9924721
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTGCCCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
GTGCCATTGATG
Flanking Amino Acid:
TLTYGYAGAWFLQLFHSVDF
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.6
35.1
Major BPS
76.2
0.65
1
67
39.8
Major PPT
76.9
0.6
0.8
69.3
31.5
Minor 5ss
39.6
-1.2
2.7
53.3
37.4
Minor BPS
49.1
-0.2
1.7
54
41.1

Associated Gene:

Gene:
CETP
Ensembl Gene ID:
ENSAPLG00000014801
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015466
9918629 - 9927402
8774