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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9924857_9925578_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9924857 - 9925578
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTGTCATT
Flanking Amino Acid:
LLGKVAYGLSNIQVNDLSIE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.1
26.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80
0.67
0.8
78.2
35.2
Minor 5ss
36.6
-1.5
2.9
46.1
36.1
Minor BPS
48.9
-0
2.3
78.3
39.3

Associated Gene:

Gene:
CETP
Ensembl Gene ID:
ENSAPLG00000014801
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015466
9918629 - 9927402
8774