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Intron Name: Anas_platyrhynchos_platyrhynchos_12_9933065_9934173_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9933065 - 9934173

Intron Length:

1109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

TTGGCTTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

AGCCACTTAATA

Flanking Amino Acid:

LVMGGTVLMYLHHVGWFPFR

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

68.4

36.6

Major BPS

78.2

0.7

77.9

32.1

Major PPT

0.54

0.9

65.7

40.9

Minor 5ss

35.9

-1.6

3.2

51.5

44.9

Minor BPS

56.6

0.2

1.5

61.28

38.5

Associated Gene:

Gene:

HERPUD1

Ensembl Gene ID:

ENSAPLG00000015583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016242

9931343 - 9937276

5934