About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9935709_9936701_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9935709 - 9936701
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTAAGC
5'SS Class:
major
3'SS Sequence:
TTGATGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCATCACTAACT
Flanking Amino Acid:
PVNVQETSSEVKTGQPRLMS
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.9
41.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.2
0.48
1
62.6
44.1
Minor 5ss
32.8
-2
3.1
44.4
43
Minor BPS
59
0.36
2
79.19
42.2

Associated Gene:

Gene:
HERPUD1
Ensembl Gene ID:
ENSAPLG00000015583
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016242
9931343 - 9937276
5934