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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9938384_9938918_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9938384 - 9938918
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGAGCAC
U12 Branch Point Sequence:
TTTCCCTCCTCT
Flanking Amino Acid:
AEPVIEVKSKFDAEFRRFAI
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
74.6
37.4
Major BPS
40.5
-0.6
1.3
40.8
39.7
Major PPT
68.2
0.41
0.8
61
29.2
Minor 5ss
37.6
-1.4
3.3
50.9
45.8
Minor BPS
41.4
-0.5
3.6
77.9
44.1

Associated Gene:

Gene:
PARD6A
Ensembl Gene ID:
ENSAPLG00000017430
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039256
9938321 - 9942567
4247