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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9945462_9946239_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9945462 - 9946239
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTTGCCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGCCTTGACA
Flanking Amino Acid:
NAKQKGHVPQYLLERKELWR
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
69.9
40.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.5
0.6
1
72.5
37.7
Minor 5ss
47.3
-0.3
2.5
61.2
38.5
Minor BPS
80.7
0.96
1.2
86.55
32.2

Associated Gene:

Gene:
ENKD1
Ensembl Gene ID:
ENSAPLG00000015716
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016389
9945296 - 9949369
4074