About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9946410_9946748_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9946410 - 9946748
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TTCTCCTTTCAG
Flanking Amino Acid:
APEALSAETKLQVEGSSIDF
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
91
0.92
0.6
89
20
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
40.6
-0.8
3.6
60.46
46.9

Associated Gene:

Gene:
ENKD1
Ensembl Gene ID:
ENSAPLG00000015716
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016389
9945296 - 9949369
4074