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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9982017_9982210_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9982017 - 9982210
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAG
U12 Branch Point Sequence:
GCTGCCTCAGCT
Flanking Amino Acid:
DSGGLPQVTQPGKLTEAFKY
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
46.3
-0.2
1.6
53.3
44.2
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
49.9
0.07
1.9
68.99
47.4

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000032679
9980604 - 9997973
17370