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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9982247_9982487_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9982247 - 9982487
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TCCCCCCAAACT
Flanking Amino Acid:
LDPTNTTFLKMADSGGLPQV
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
49.3
0.03
2
69.96
46.6

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000032679
9980604 - 9997973
17370