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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9983150_9983236_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9983150 - 9983236
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCCTCTCATT
Flanking Amino Acid:
PGTVPNAKTLRCPVMLVVGD
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
73.7
35.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.6
0.71
0.8
72.9
36.3
Minor 5ss
35.5
-1.6
3.5
51.6
45.1
Minor BPS
50.4
0.09
2
77.83
38.9

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032679
9980604 - 9997973
17370
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000047031
9982756 - 9997973
15218