Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9983678_9984020_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9983678 - 9984020

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

CCTGTTGGCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

CTGCCCTGATTT

Flanking Amino Acid:

DTVLSHLFSQEELVNNTELV

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.6

32.5

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

65.5

0.35

60.2

40.4

Minor 5ss

31.9

-2.1

3.6

47.6

Minor BPS

49.3

0.03

1.8

66.1

44.7

Associated Gene:

Gene:

NDRG4

Ensembl Gene ID:

ENSAPLG00000015766

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032679

9980604 - 9997973

17370

ENSAPLT00000018005

9980604 - 9997973

17370

ENSAPLT00000016436

9980604 - 10003140

22537

ENSAPLT00000047031

9982756 - 9997973

15218