About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9984078_9984210_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9984078 - 9984210
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCACG
5'SS Class:
major
3'SS Sequence:
GTTCCCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAACAA
U12 Branch Point Sequence:
GTTCCCTCCACA
Flanking Amino Acid:
KGWIDWAAAKLSGLTSTLPD
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
43.9
Major BPS
46.2
-0.2
1
49.3
33.5
Major PPT
75.4
0.57
0.8
68.8
31.7
Minor 5ss
32.9
-2
3.1
39.9
45.9
Minor BPS
54.1
0.12
2
70.34
41.4

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000047031
9982756 - 9997973
15218
ENSAPLT00000032679
9980604 - 9997973
17370
ENSAPLT00000018005
9980604 - 9997973
17370