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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9984298_9984644_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9984298 - 9984644
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TTGCTTGGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
TGAGCATCACCC
Flanking Amino Acid:
AGAYVLAKFALIFPDLVEGL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
46.2
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
73.4
0.53
1
68.8
41.9
Minor 5ss
36.5
-1.5
3.2
48.4
47.2
Minor BPS
43
-0.5
2.1
53.68
43.4

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000047031
9982756 - 9997973
15218
ENSAPLT00000032679
9980604 - 9997973
17370