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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9984706_9984883_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9984706 - 9984883
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
CTCTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
GTTTCCCCATCC
Flanking Amino Acid:
AMLPSVVQHFGFKYVIGIGV
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
81.3
0.7
0.8
72.4
37.8
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
48.9
-0.1
2.1
68.69
42.2

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047031
9982756 - 9997973
15218
ENSAPLT00000032679
9980604 - 9997973
17370
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537