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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9985254_9985653_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9985254 - 9985653
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TGCCCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGCCCTTTGACA
Flanking Amino Acid:
ILTYHDVGLNHKLCFNTFFN
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
66.2
39.6
Major BPS
79
0.72
1
69
38.9
Major PPT
71.6
0.49
1
67.6
37.8
Minor 5ss
31.7
-2.1
3.3
46.2
42.2
Minor BPS
65.1
0.47
1.2
68.53
37.7

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000047031
9982756 - 9997973
15218
ENSAPLT00000032679
9980604 - 9997973
17370