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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9985760_9992906_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9985760 - 9992906
Intron Length:
7147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACCG
5'SS Class:
major
3'SS Sequence:
CCTCGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
GTCACCCCATCT
Flanking Amino Acid:
FLSAVDTDWKEHDIETPYGL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
60
44.9
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
70.6
0.46
0.8
61.2
35.1
Minor 5ss
30.9
-2.2
3.3
39.5
45.9
Minor BPS
43.8
-0.3
2.1
62.89
46.4

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000047031
9982756 - 9997973
15218
ENSAPLT00000032679
9980604 - 9997973
17370