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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9992952_9993372_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9992952 - 9993372
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CGGTCCCTAACA
Flanking Amino Acid:
PLLRGQDTELENSEVFLSAV
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
81.2
0.7
0.7
73.4
31.5
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
62.1
0.38
1.8
68.9
43.2

Associated Gene:

Gene:
NDRG4
Ensembl Gene ID:
ENSAPLG00000015766
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032679
9980604 - 9997973
17370
ENSAPLT00000018005
9980604 - 9997973
17370
ENSAPLT00000016436
9980604 - 10003140
22537
ENSAPLT00000047031
9982756 - 9997973
15218