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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10003832_10004447_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10003832 - 10004447
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTATTTAATC
Flanking Amino Acid:
GLVGQENAREACGIIVELIK
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.9
0.54
0.9
67.1
38.6
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
64.9
0.45
1.4
69.27
36.6

Associated Gene:

Gene:
RUVBL1
Ensembl Gene ID:
ENSAPLG00000006088
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006351
10003691 - 10019821
16131