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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10004535_10005153_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10004535 - 10005153
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTTTTCTATTT
Flanking Amino Acid:
LLAGPPGTGKTALALAIAQE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78.2
0.63
1
82.8
32.3
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
49.1
0.01
1.9
71.32
40.7

Associated Gene:

Gene:
RUVBL1
Ensembl Gene ID:
ENSAPLG00000006088
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006351
10003691 - 10019821
16131