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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10010282_10011135_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10010282 - 10011135
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
AATTCTATACCT
Flanking Amino Acid:
YIEANSGAVKRQGRCDTYAT
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
81
0.7
0.8
72.8
37.5
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
55.6
0.25
1.9
76.53
39.8

Associated Gene:

Gene:
RUVBL1
Ensembl Gene ID:
ENSAPLG00000006088
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006351
10003691 - 10019821
16131