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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10014123_10015995_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10014123 - 10015995
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
CAGTAGTTGATC
Flanking Amino Acid:
FASNRGNCVIRGTEDVVSPH
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
87.4
0.84
0.6
85.2
22.3
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
43.9
-0.4
2.2
50.72
40.8

Associated Gene:

Gene:
RUVBL1
Ensembl Gene ID:
ENSAPLG00000006088
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006351
10003691 - 10019821
16131