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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10016099_10019236_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10016099 - 10019236
Intron Length:
3138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
TTCATTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCTGACTTAATT
Flanking Amino Acid:
MLYTPQEMKQIIKLRAQTEG
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.5
0.55
0.9
70.1
35.1
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
60.2
0.4
1.7
72.18
45.2

Associated Gene:

Gene:
RUVBL1
Ensembl Gene ID:
ENSAPLG00000006088
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006351
10003691 - 10019821
16131