About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10041871_10042698_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10041871 - 10042698
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CCTTGTTTTACA
Flanking Amino Acid:
RETSMVHELNRYIPTAAAFG
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85
0.79
0.8
78.9
33.1
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
49.2
-0
2.1
62.29
44.3

Associated Gene:

Gene:
SEC61A1
Ensembl Gene ID:
ENSAPLG00000005703
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005922
10041311 - 10051234
9924