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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10042776_10044225_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10042776 - 10044225
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGATTCAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTTCTTGATT
Flanking Amino Acid:
IEVSGSSAKDVAKQLKEQQM
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
69.7
0.44
1
63.1
42
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
77.3
0.94
1
87.23
31.9

Associated Gene:

Gene:
SEC61A1
Ensembl Gene ID:
ENSAPLG00000005703
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005922
10041311 - 10051234
9924