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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10067553_10079098_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10067553 - 10079098
Intron Length:
11546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCAAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGGTTCTTACGT
Flanking Amino Acid:
LYLCGGFHGAARHEVITKEI
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
67.2
39.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
37.7
-1.4
3.1
48.8
47
Minor BPS
53.5
0.19
1.9
71.67
45.4

Associated Gene:

Gene:
KBTBD12
Ensembl Gene ID:
ENSAPLG00000005631
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005814
10067383 - 10094536
27154