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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10079297_10087660_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10079297 - 10087660
Intron Length:
8364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TATATTTGACCT
Flanking Amino Acid:
AVVNSEIYVLGGIGCLGRDR
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.1
40.1
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
92.2
0.95
0.6
88.3
21.3
Minor 5ss
29.4
-2.4
3.3
30
43
Minor BPS
49.4
0.03
1.7
70.23
40.7

Associated Gene:

Gene:
KBTBD12
Ensembl Gene ID:
ENSAPLG00000005631
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005814
10067383 - 10094536
27154