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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10093139_10094475_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10093139 - 10094475
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTAACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
GTTCCTCTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
76.5
33.7
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
68.6
0.42
0.9
59.5
35.8
Minor 5ss
28.6
-2.5
3.2
36.4
42
Minor BPS
65.6
0.57
1.7
83.32
37.1

Associated Gene:

Gene:
KBTBD12
Ensembl Gene ID:
ENSAPLG00000005631
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005814
10067383 - 10094536
27154