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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10117322_10136924_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10117322 - 10136924
Intron Length:
19603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
ATGCTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TATACCTTAATG
Flanking Amino Acid:
CRYWKPATAARALVFIAHGA
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
66.6
0.37
0.9
63.8
37.7
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
75.2
0.65
1.3
73.67
38.6

Associated Gene:

Gene:
MGLL
Ensembl Gene ID:
ENSAPLG00000005523
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005734
10116107 - 10176682
60576
ENSAPLT00000038627
10079422 - 10176487
97066
ENSAPLT00000038173
10115752 - 10176035
60284