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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10137032_10161980_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10137032 - 10161980
Intron Length:
24949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGAAT
U12 Branch Point Sequence:
TTTTCCTCTACA
Flanking Amino Acid:
LNLFVFAHDHVGHGQSEGDR
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
59.4
0.24
1.5
69.7
44.2
Major PPT
89.9
0.9
0.6
84.6
23.3
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
69.4
0.6
1.9
84.2
35.6

Associated Gene:

Gene:
MGLL
Ensembl Gene ID:
ENSAPLG00000005523
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038173
10115752 - 10176035
60284
ENSAPLT00000022116
10132639 - 10176035
43397
ENSAPLT00000005734
10116107 - 10176682
60576
ENSAPLT00000038627
10079422 - 10176487
97066