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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10163723_10169481_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10163723 - 10169481
Intron Length:
5759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATCTCTTTAACT
Flanking Amino Acid:
ASPEVATPIKVFAAKVLNLV
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
77.6
0.62
0.7
72
26.3
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
83.3
1.12
1
90.07
34.1

Associated Gene:

Gene:
MGLL
Ensembl Gene ID:
ENSAPLG00000005523
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038173
10115752 - 10176035
60284
ENSAPLT00000022116
10132639 - 10176035
43397
ENSAPLT00000005734
10116107 - 10176682
60576
ENSAPLT00000038627
10079422 - 10176487
97066