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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10169572_10174736_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10169572 - 10174736
Intron Length:
5165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
CTAACCTTAAAT
Flanking Amino Acid:
PNAVSRNKKEMESYTSDPLV
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
75.7
0.58
0.9
69.5
36.8
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
69.1
0.68
1.5
79.3
42.1

Associated Gene:

Gene:
MGLL
Ensembl Gene ID:
ENSAPLG00000005523
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038173
10115752 - 10176035
60284
ENSAPLT00000022116
10132639 - 10176035
43397
ENSAPLT00000005734
10116107 - 10176682
60576
ENSAPLT00000038627
10079422 - 10176487
97066