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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10187751_10189572_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10187751 - 10189572
Intron Length:
1822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAGAA
5'SS Class:
major
3'SS Sequence:
CCGCCCCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTCTTCCTAACA
Flanking Amino Acid:
TEYMAKIIEKLVESEEFVAA
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
62.2
38.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
64.3
0.32
0.9
54.3
35.6
Minor 5ss
33.9
-1.8
3.6
46.4
48.9
Minor BPS
63.2
0.41
1.7
72.44
39.4

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321