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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10189774_10192969_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10189774 - 10192969
Intron Length:
3196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCTCTTTTCATT
Flanking Amino Acid:
LYYIYSDDTELSPENAYDVL
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
1
73.9
40.7
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
48.7
-0
1.7
63.63
42

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321