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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10193138_10193737_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10193138 - 10193737
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
TCTTCCTTCTCT
Flanking Amino Acid:
VADYNFLCHKAFFCGRSDYF
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
80.6
0.69
0.7
73.4
31.6
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
47.5
-0.1
3.6
83.49
43.8

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321