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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10193837_10198994_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10193837 - 10198994
Intron Length:
5158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTAAA
U12 Branch Point Sequence:
AGAACGGTAAAG
Flanking Amino Acid:
ADCALPAELRVGFGELPFDS
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60.5
41.2
Major BPS
49.1
-0
1.3
51
41.5
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
30.8
-2.2
3.3
33.7
42.2
Minor BPS
37.5
-1
2.5
41.7
42.2

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321