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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10199111_10205771_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10199111 - 10205771
Intron Length:
6661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAG
U12 Branch Point Sequence:
ATTTAGGCATCT
Flanking Amino Acid:
ETKCKKVYEFVSSKPGTCVK
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
55.9
0.15
1.5
55.4
41.7
Major PPT
84.9
0.79
0.8
77.2
37.1
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
36.2
-0.9
2.7
63.51
46.4

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321