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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10210158_10210969_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10210158 - 10210969
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TGTCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTGTTGTCATTT
Flanking Amino Acid:
EELVRYLLANGAKCEANTFD
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.7
0.74
0.9
76.8
37
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
41.5
-0.5
2.3
58.76
45.4

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321