About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10211026_10212118_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10211026 - 10212118
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCACTAATT
Flanking Amino Acid:
NVRDKWDSTPLYYACLCGHE
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
64.8
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.2
0.61
1
73.5
41.9
Minor 5ss
34.3
-1.8
3.1
52.6
43.7
Minor BPS
61.2
0.43
1.9
83.27
37.3

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321