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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10212182_10213808_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10212182 - 10213808
Intron Length:
1627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
AGTACAAGAAGT
Flanking Amino Acid:
SCKKGDVSRVRYLLEQRDVE
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
40.8
-0.6
2.1
59.81
42.4

Associated Gene:

Gene:
ABTB1
Ensembl Gene ID:
ENSAPLG00000005102
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005298
10187544 - 10213864
26321