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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10218293_10218621_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10218293 - 10218621
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TCTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTGTCTCCATTT
Flanking Amino Acid:
QRRLPKMKNMSHGEELRFVE
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.6
37.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
86.2
0.81
0.7
81
24.1
Minor 5ss
33.7
-1.9
3.4
44.7
44.3
Minor BPS
46
-0.2
2
68.52
43

Associated Gene:

Gene:
PODXL2
Ensembl Gene ID:
ENSAPLG00000005040
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005196
10218083 - 10243398
25316