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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10218802_10220275_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10218802 - 10220275
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAG
U12 Branch Point Sequence:
AGGGGTTTCAGT
Flanking Amino Acid:
LGDVKRSLAEIGIQNYSTTT
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
58.3
0.21
1.7
71.4
45.1
Major PPT
84.8
0.78
0.7
76.7
32
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
37.9
-0.8
2.2
49.75
44.5

Associated Gene:

Gene:
PODXL2
Ensembl Gene ID:
ENSAPLG00000005040
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005196
10218083 - 10243398
25316