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Intron Name: Anas_platyrhynchos_platyrhynchos_13_10220338_10221844_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10220338 - 10221844

Intron Length:

1507

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

CAGCACTGATCT

Flanking Amino Acid:

HLLMTLAGEQGVIPTKDVLM

Intron Amino Acid Position:

492

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

76.2

39.9

Major BPS

71.2

0.53

37.5

Major PPT

88.3

0.86

0.7

83.7

24.4

Minor 5ss

35.9

-1.6

3.3

40.9

45.3

Minor BPS

-0.3

1.9

56.81

44.9

Associated Gene:

Gene:

PODXL2

Ensembl Gene ID:

ENSAPLG00000005040

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005196

10218083 - 10243398

25316