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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10224713_10225759_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10224713 - 10225759
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCTG
5'SS Class:
major
3'SS Sequence:
CTTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTGTCTTTACGT
Flanking Amino Acid:
PTELPWDSAQVICKDWSNLA
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.6
46.8
Major BPS
74
0.6
1
65.6
41.1
Major PPT
85.1
0.79
0.8
76.7
37.4
Minor 5ss
32.3
-2
3.7
46.2
49.1
Minor BPS
52.9
0.17
2
70.68
46.8

Associated Gene:

Gene:
PODXL2
Ensembl Gene ID:
ENSAPLG00000005040
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005196
10218083 - 10243398
25316