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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10233891_10243346_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10233891 - 10243346
Intron Length:
9456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCCTCTCTGATG
Flanking Amino Acid:
PALLLLLLAAGTLCLCLASS
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
79
0.72
1
69
38.9
Major PPT
73.7
0.53
1
67.9
37.7
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
49
-0.2
1.7
54.29
41.8

Associated Gene:

Gene:
PODXL2
Ensembl Gene ID:
ENSAPLG00000005040
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005196
10218083 - 10243398
25316